Inference and Estimation of Hidden Markov Models and Hidden Semi-Markov Models

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Documentation for package ‘HMMHSMM’ version 0.1.0

• DESCRIPTION file.

Help Pages

conditionalreturnsHMMgev	Plot Conditional Return Levels from GEV-HMM
conditionalreturnsHSMMgev	Plot Conditional Return Levels from GEV-HSMM
confintHMM	Bootstrap Confidence Intervals for Hidden Markov Models
confintHSMM	Bootstrap Confidence Intervals for Hidden Semi-Markov Models
daily_maxima	Daily maxima of geomagnetic rate-of-change data from Eskdalemuir Magnetic Observatory
exceedanceplotHMMgev	Plot Exceedance Probabilities from GEV-HMM
exceedanceplotHSMMgev	Plot Exceedance Probabilities from GEV-HSMM
findmleHMM	Maximum Likelihood Estimation for Hidden Markov Models
findmleHMMnostarting	Multiple Initialization Maximum Likelihood Estimation for Hidden Markov Models
findmleHSMM	Maximum Likelihood Estimation for Hidden Semi-Markov Models
findmleHSMMnostarting	Fit Hidden Semi-Markov Model (HSMM) Without User-Provided Starting Values
generateHMM	Generate Data from a Hidden Markov Model
generateHSMM	Generate Data from a Hidden Semi-Markov Model
globaldecodeHMM	Global Decoding for Hidden Markov Models
globaldecodeHSMM	Global Decoding of Hidden Semi-Markov Models
HMMVarianceMatrix	Variance-Covariance Matrix for Hidden Markov Models
HSMMVarianceMatrix	Variance-Covariance Matrix for Hidden Semi-Markov Models
IC	Calculate Information Criteria for HMM/HSMM Models
localdecodeHMM	Local Decoding for Hidden Markov Models
localdecodeHSMM	Local Decoding for Hidden Semi-Markov Models
plotHMMParameters	Plot Hidden Markov Model Parameters Over Time
plotHSMMParameters	Plot Hidden Semi-Markov Model Parameters Over Time
residualsHMM	Ordinary Residuals for Hidden Markov Models
residualsHSMM	Ordinary Residuals for Hidden Semi-Markov Models
weekly_maxima	Weekly maxima of geomagnetic rate-of-change data from Eskdalemuir Magnetic Observatory