Optimal Project Prioritization

Documentation for package ‘oppr’ version 1.1.0

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oppr: Optimal Project Prioritization

-- A --

action_names	Action names
action_names-method	Action names
add_absolute_targets	Add absolute targets
add_absolute_targets-method	Add absolute targets
add_abs_constraint_approach	Add an absolute constraint approach
add_binary_decisions	Add binary decisions
add_cbc_solver	Add a _CBC_ solver
add_default_solver	Add a default solver
add_default_weights	Add default weights
add_feature_weights	Add feature weights
add_feature_weights-method	Add feature weights
add_gurobi_solver	Add a _Gurobi_ solver
add_heuristic_solver	Add a heuristic solver
add_highs_solver	Add a _HiGHS_ solver
add_locked_in_action_constraints	Add locked in action constraints
add_locked_in_action_constraints-method	Add locked in action constraints
add_locked_in_constraints	Deprecation notice
add_locked_in_project_constraints	Add locked in project constraints
add_locked_in_project_constraints-method	Add locked in project constraints
add_locked_out_action_constraints	Add locked out action constraints
add_locked_out_action_constraints-method	Add locked out action constraints
add_locked_out_constraints	Deprecation notice
add_locked_out_project_constraints	Add locked out project constraints
add_locked_out_project_constraints-method	Add locked out project constraints
add_lpsolveapi_solver	Add a _lp_solve_ solver with _lpSolveAPI_
add_lpsymphony_solver	Add a _SYMPHONY_ solver with _lpsymphony_
add_manual_locked_action_constraints	Add manually specified locked constraints for actions
add_manual_locked_action_constraints-method	Add manually specified locked constraints for actions
add_manual_locked_constraints	Deprecation notice
add_manual_locked_project_constraints	Add manually specified locked constraints for projects
add_manual_locked_project_constraints-method	Add manually specified locked constraints for projects
add_manual_targets	Add manual targets
add_manual_targets-method	Add manual targets
add_max_phylo_div_objective	Add maximum phylogenetic diversity objective
add_max_richness_objective	Add maximum richness objective
add_max_targets_met_objective	Add maximum targets met objective
add_max_wtd_sum_objective	Add maximum weighted sum objective
add_min_set_objective	Add minimum set objective
add_random_solver	Add a random solver
add_ref_point_approach	Add a reference point approach
add_relative_targets	Add relative targets
add_relative_targets-method	Add relative targets
add_rsymphony_solver	Add a _SYMPHONY_ solver with _Rsymphony_
add_wtd_goal_approach	Add a weighted goal achievement approach
approaches	Multi-objective optimization approaches
as.list-method	Manipulate tibbles
as.list.OptimizationProblem	Convert 'OptimizationProblem' to list

-- B --

branch_matrix	Branch matrix
branch_matrix.default	Branch matrix
branch_matrix.phylo	Branch matrix

-- C --

compile	Compile a problem
compile.ProjectProblem	Compile a problem
Constraint	Constraint class
Constraint-class	Constraint class
constraints	Project prioritization problem constraints

-- D --

Decision	Decision class
Decision-class	Decision class
decisions	Specify the type of decisions

-- F --

feature_names	Feature names
feature_names-method	Feature names

-- I --

is.Waiver

Is waiver?

-- M --

MultiObjApproach	Multi-objective approach class
MultiObjApproach-class	Multi-objective approach class
MultiObjProjectProblem	Multi-objective project problem class
MultiObjProjectProblem-class	Multi-objective project problem class
multi_compile.list	Compile a problem
multi_compile.MultiObjProjectProblem	Compile a problem
multi_problem	Multi-objective project prioritization problem

-- N --

ncol	Manipulate tibbles
ncol-method	Manipulate tibbles
new_optimization_problem	Optimization problem
new_waiver	Waiver
nrow	Manipulate tibbles
nrow-method	Manipulate tibbles
number_of_actions	Number of actions
number_of_actions-method	Number of actions
number_of_features	Number of features
number_of_features-method	Number of features
number_of_problems	Number of problems
number_of_problems-method	Number of problems
number_of_projects	Number of projects
number_of_projects-method	Number of projects

-- O --

Objective	Objective class
Objective-class	Objective class
objectives	Problem objective
oppr	oppr: Optimal Project Prioritization
oppr-deprecated	Deprecation notice
OptimizationProblem	Optimization problem class
OptimizationProblem-class	Optimization problem class

-- P --

plot.ProjectProblem	Plot a solution to a project prioritization problem
plot_feature_persistence	Deprecation notice
plot_phylo_persistence	Deprecation notice
plot_solution_barplot	Plot a bar plot to visualize a project prioritization
plot_solution_phylogram	Plot a phylogram to visualize a project prioritization
problem	Project prioritization problem
problem_names	Problem names
problem_names-method	Problem names
ProjectModifier	Conservation problem modifier class
ProjectModifier-class	Conservation problem modifier class
ProjectProblem	Project problem class
ProjectProblem-class	Project problem class
project_cost_effectiveness	Project cost effectiveness
project_names	Project names
project_names-method	Project names

-- R --

rank_importance	Rank importance
replacement_costs	Replacement cost
run_example	Run example?

-- S --

show	Show
show-method	Show
simulate_multi_ppp_data	Simulate multi-objective data for the 'Project Prioritization Protocol'
simulate_ppp_data	Simulate data for the 'Project Prioritization Protocol'
simulate_ptm_data	Simulate data for 'Priority threat management'
sim_actions	Simulated data
sim_data	Simulated data
sim_features	Simulated data
sim_multi_actions	Simulated multi-objective data
sim_multi_data	Simulated multi-objective data
sim_multi_features	Simulated multi-objective data
sim_multi_projects	Simulated multi-objective data
sim_multi_tree	Simulated multi-objective data
sim_projects	Simulated data
sim_tree	Simulated data
solution_statistics	Solution statistics
solve	Solve
solve-method	Solve
Solver	Solver class
Solver-class	Solver class
solvers	Solvers

-- T --

Target	Target class
Target-class	Target class
targets	Targets
tibble-methods	Manipulate tibbles

-- W --

Weight	Weight class
Weight-class	Weight class
weights	Weights