# Dynamic Structural Equation Models

## Documentation for package ‘dsem’ version 2.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

as_fitted_DAG | Convert output from package dsem to phylopath
bering_sea | Bering Sea marine ecosystem
cAIC | Calculate conditional AIC
classify_variables | Classify variables path
convert_equations | Convert equations notation
dsem | Fit dynamic structural equation model
dsemRTMB | Fit dynamic structural equation model
dsem_control | Detailed control for dsem structure
hare_lynx | Lynx-Hare dynamics
isle_royale | Isle Royale wolf and moose
lake_washington | Lake washington plankton
list_parameters | List fixed and random effects
logLik.dsem | Marginal log-likelihood
loo_residuals | Calculate leave-one-out residuals
make_dfa | Make text for dynamic factor analysis
make_dsem_ram | Make a RAM (Reticular Action Model)
make_matrices | Make path matrices
paramesium_didinium | Paramesium-Didinium dynamics
parse_path | Parse path
partition_variance | Partition variance in one variable due to another (EXPERIMENTAL)
pdo_departure_bay | Pacific Decadal Oscillation and Departure Bay temperatures
plot.dsem | Simulate dsem
predict.dsem | predictions using dsem
print.dsem | Print fitted dsem object
read_model | Make a RAM (Reticular Action Model)
residuals.dsem | Calculate residuals
rk4sys | Classical Runge-Kutta for system of equations
sea_otter | Sea otter trophic cascade
simulate.dsem | Simulate dsem
stepwise_selection | Simulate dsem
summary.dsem | summarize dsem
test_dsep | Test d-separation
TMBAIC | Calculate marginal AIC for a fitted model
total_effect | Calculate total effects
vcov.dsem | Extract Variance-Covariance Matrix