Last updated on 2026-10-24 12:51:31 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 5.72 | 53.61 | 59.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 4.88 | 40.44 | 45.32 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 41.37 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 40.37 | OK | |||
| r-devel-windows-x86_64 | 0.1.0 | 9.00 | 66.00 | 75.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 6.12 | 49.46 | 55.58 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 5.42 | 49.66 | 55.08 | OK | |
| r-release-macos-arm64 | 0.1.0 | 2.00 | 15.00 | 17.00 | OK | |
| r-release-macos-x86_64 | 0.1.0 | 4.00 | 63.00 | 67.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 8.00 | 64.00 | 72.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 4.00 | 52.00 | 56.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 10.00 | 75.00 | 85.00 | OK |
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘ExtendedABSurvTDC-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ExtendedCoxPred
> ### Title: ExtendedABCoxPH Prediction
> ### Aliases: ExtendedCoxPred
>
> ### ** Examples
>
> library("ExtendedABSurvTDC")
> load(system.file("extdata", "data.RData", package = "ExtendedABSurvTDC"))
> PropData<-DataPrep(data =as.data.frame(data_test))
No time interval specified, defaulting to 90 days
Max no. of lactations to be considered not specified. Defaulting to the max no. present among all animals in data
> model<-ExtendedABSurvTDC(PropData)
CoxPH model considering all lactations available in wide data
Warning in agreg.fit(X, Y, istrat, offset, init, control, weights = weights, :
Loglik converged before variable 10,13,14 ; beta may be infinite.
> Lact_1<-c("Yes","Yes","Yes","No","No","No","No","No","No","No","No")
> Lact_2<-c("No","No","No","No","Yes","Yes","No","No","No","No","No")
> Lact_3<-c("No","No","No","No","No","No","No","No","Yes","Yes","Yes")
> Lact_4<-c("No","No","No","No","No","No","No","No","No","No","No")
> Lact_5<-c("No","No","No","No","No","No","No","No","No","No","No")
> Lact_6<-c("No","No","No","No","No","No","No","No","No","No","No")
> Lact_7<-c("No","No","No","No","No","No","No","No","No","No","No")
> Lact_8<-c("No","No","No","No","No","No","No","No","No","No","No")
> Lact_9<-c("No","No","No","No","No","No","No","No","No","No","No")
> ndata<- data.frame(Lact_1,Lact_2,Lact_3,Lact_4,Lact_5,Lact_6,Lact_7,
+ Lact_8,Lact_9)
> NewData<-ndata
> HYS<-2033
> AFC <- 1400
> Y=as.factor(1)
> S=as.factor(1)
> H=as.factor(1)
> NewData_default <- data.frame(AFC, Y, S, NewData) # Data for default argument of "factors"
> ExtendedCoxPred(Model=model, NewData=NewData_default)
Error in a$specials[[i]] : subscript out of bounds
Calls: ExtendedCoxPred ... survfit.coxph -> model.matrix.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc