Last updated on 2026-10-24 01:51:36 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3-11 | 2.74 | 141.17 | 143.91 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3-11 | 2.22 | 113.51 | 115.73 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3-11 | 112.58 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3-11 | 121.16 | OK | |||
| r-devel-windows-x86_64 | 1.3-11 | 8.00 | 122.00 | 130.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 1.3-11 | 3.05 | 121.46 | 124.51 | OK | |
| r-release-linux-x86_64 | 1.3-11 | 2.60 | 121.49 | 124.09 | OK | |
| r-release-macos-arm64 | 1.3-11 | 1.00 | 60.00 | 61.00 | OK | |
| r-release-macos-x86_64 | 1.3-11 | 2.00 | 248.00 | 250.00 | OK | |
| r-release-windows-x86_64 | 1.3-11 | 7.00 | 81.00 | 88.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 1.3-11 | OK | ||||
| r-oldrel-macos-x86_64 | 1.3-11 | 2.00 | 261.00 | 263.00 | OK | |
| r-oldrel-windows-x86_64 | 1.3-11 | 7.00 | 74.00 | 81.00 | OK | --no-vignettes |
Version: 1.3-11
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Ch_analysing_longitudinal_dataI.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
Attaching package: 'lme4'
The following object is masked from 'package:HSAUR':
schizophrenia
--- finished re-building 'Ch_analysing_longitudinal_dataI.Rnw'
--- re-building ‘Ch_analysing_longitudinal_dataII.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
--- finished re-building 'Ch_analysing_longitudinal_dataII.Rnw'
--- re-building ‘Ch_analysis_of_variance.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_analysis_of_variance.Rnw'
--- re-building ‘Ch_cluster_analysis.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
Package 'mclust' version 6.1.3
Type 'citation("mclust")' for citing this R package in publications.
Attaching package: 'mvtnorm'
The following object is masked from 'package:mclust':
dmvnorm
--- finished re-building 'Ch_cluster_analysis.Rnw'
--- re-building ‘Ch_conditional_inference.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
Loading required package: survival
Warning in chisq.test(suicides) :
Chi-squared approximation may be incorrect
Warning in approximate(B = 19999) :
'B' is deprecated; use 'nresample' instead
--- finished re-building 'Ch_conditional_inference.Rnw'
--- re-building ‘Ch_density_estimation.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Attaching package: 'boot'
The following object is masked from 'package:flexmix':
boot
Package 'mclust' version 6.1.3
Type 'citation("mclust")' for citing this R package in publications.
Warning in sub(object$syntax$docexpr, val, chunk[pos[1L]]) :
argument 'replacement' has length > 1 and only the first element will be used
--- finished re-building 'Ch_density_estimation.Rnw'
--- re-building ‘Ch_errata.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_errata.Rnw'
--- re-building ‘Ch_introduction_to_R.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_introduction_to_R.Rnw'
--- re-building ‘Ch_logistic_regression_glm.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
--- finished re-building 'Ch_logistic_regression_glm.Rnw'
--- re-building ‘Ch_meta_analysis.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_meta_analysis.Rnw'
--- re-building ‘Ch_multidimensional_scaling.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
Warning in cmdscale(watervoles, k = 13, eig = TRUE) :
only 7 of the first 13 eigenvalues are > 0
--- finished re-building 'Ch_multidimensional_scaling.Rnw'
--- re-building ‘Ch_multiple_linear_regression.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_multiple_linear_regression.Rnw'
--- re-building ‘Ch_principal_components_analysis.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'Ch_principal_components_analysis.Rnw'
--- re-building ‘Ch_recursive_partitioning.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
Loading required package: grid
randomForest 4.7-1.2
Type rfNews() to see new features/changes/bug fixes.
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
Loading required package: strucchange
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Loading required package: sandwich
--- finished re-building 'Ch_recursive_partitioning.Rnw'
--- re-building ‘Ch_simple_inference.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
Loading required package: grid
--- finished re-building 'Ch_simple_inference.Rnw'
--- re-building ‘Ch_survival_analysis.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
Loading required package: grid
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
Loading required package: strucchange
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Loading required package: sandwich
Warning in plot.window(...) : "legend.bty" is not a graphical parameter
Warning in plot.window(...) :
"legend.text" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"legend.bty" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.text" is not a graphical parameter
Warning in box(...) : "legend.bty" is not a graphical parameter
Warning in box(...) : "legend.text" is not a graphical parameter
Warning in title(...) : "legend.bty" is not a graphical parameter
Warning in title(...) : "legend.text" is not a graphical parameter
Warning in approximate(B = 10000) :
'B' is deprecated; use 'nresample' instead
Error: processing vignette 'Ch_survival_analysis.Rnw' failed with diagnostics:
chunk 12 (label = SA-GBSG2-zph)
Error in a$specials[[i]] : subscript out of bounds
--- failed re-building 'Ch_survival_analysis.Rnw'
--- re-building ‘preface.Rnw’ using Sweave
Loading required package: HSAUR
Loading required package: tools
--- finished re-building 'preface.Rnw'
SUMMARY: processing the following file failed:
‘Ch_survival_analysis.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc