Last updated on 2026-07-09 00:52:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.4 | 48.38 | 102.95 | 151.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.4 | 31.86 | 72.57 | 104.43 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.5 | 82.00 | 404.08 | 486.08 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.5 | 106.00 | 523.42 | 629.42 | ERROR | |
| r-devel-windows-x86_64 | 0.1.4 | 54.00 | 120.00 | 174.00 | OK | |
| r-patched-linux-x86_64 | 0.1.4 | 36.98 | 94.64 | 131.62 | OK | |
| r-release-linux-x86_64 | 0.1.4 | 36.85 | 95.43 | 132.28 | OK | |
| r-release-macos-arm64 | 0.1.5 | 13.00 | 137.00 | 150.00 | ERROR | |
| r-release-macos-x86_64 | 0.1.5 | 35.00 | 456.00 | 491.00 | ERROR | |
| r-release-windows-x86_64 | 0.1.4 | 56.00 | 122.00 | 178.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.5 | 11.00 | 78.00 | 89.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.1.5 | 34.00 | 503.00 | 537.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.1.4 | 62.00 | 152.00 | 214.00 | OK |
Version: 0.1.5
Check: examples
Result: ERROR
Running examples in ‘MetaHD-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot.MetaHDResult
> ### Title: Plot 'MetaHD' results
> ### Aliases: plot.MetaHDResult
>
> ### ** Examples
>
> set.seed(123)
> N <- 100
> truth <- rbinom(N, 1, 0.2) # 20% of features are true signals
> res <- MetaHDResult(
+ sets = list(
+ method_A = runif(N)^ifelse(truth, 5, 1),
+ method_B = runif(N)^ifelse(truth, 3, 1),
+ method_C = runif(N)^ifelse(truth, 2, 1)
+ ),
+ truth = truth
+ )
>
> # Example 1: simple UpSet plot
> plot(res, type = "upset")
>
> # Example 2: highlights via the `highlight` argument
> plot(res, type = "upset",
+ highlight = list(c("Truth", "method_A", "method_B", "method_C")),
+ highlight.colors = "darkgreen")
>
> # Example 3: passing in-built queries
> plot(res, type = "upset",
+ queries = list(
+ list(
+ query = UpSetR::intersects,
+ params = list(c("method_A", "method_B", "method_C")),
+ color = "dodgerblue3",
+ active = TRUE,
+ query.name = "Identified by all methods"
+ ),
+ list(
+ query = function(row) {
+ row["method_A"] == 1 && sum(row) < length(row)
+ },
+ color = "orange",
+ active = TRUE,
+ query.name = "Others identified by method_A"
+ )
+ ),
+ show.truth = FALSE)
>
> # Example 4: ROC curves with AUC values
> # Requires numeric p-values in sets
> aucs <- plot(res, type = "ROC")
> print(aucs)
method_A method_B method_C
0.8150407 0.8306233 0.7256098
>
> # Example 5: Venn diagram (Tav, 2025)
> # Requires R >= 4.5 and gVenn installed
> plot(res, type = "venn")
Error: Package 'gVenn' is required for Venn diagrams.
It requires R >= 4.5. Install it with:
BiocManager::install('gVenn')
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64