Last updated on 2026-01-29 00:48:51 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.4 | 9.01 | 91.38 | 100.39 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.4 | 6.91 | 70.41 | 77.32 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.4 | 16.00 | 143.66 | 159.66 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 16.00 | 161.51 | 177.51 | OK | |
| r-devel-windows-x86_64 | 1.0.4 | 12.00 | 114.00 | 126.00 | OK | |
| r-patched-linux-x86_64 | 1.0.4 | 8.60 | 87.40 | 96.00 | ERROR | |
| r-release-linux-x86_64 | 1.0.1 | 9.49 | 87.23 | 96.72 | OK | |
| r-release-macos-arm64 | 1.0.4 | 4.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.4 | 7.00 | 110.00 | 117.00 | OK | |
| r-release-windows-x86_64 | 1.0.4 | 15.00 | 117.00 | 132.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.4 | 10.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.4 | 7.00 | 214.00 | 221.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.4 | 16.00 | 135.00 | 151.00 | OK |
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘iSubGen-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write.scaling.factors
> ### Title: Write scaling factors to file
> ### Aliases: write.scaling.factors
>
> ### ** Examples
>
>
> # load the aberration profiles for three data types
> example.molecular.data.dir <- paste0(path.package('iSubGen'),'/exdata/');
> molecular.data <- list();
> for (i in c('cna','snv','methy')) {
+ molecular.data[[i]] <- load.molecular.aberration.data(
+ paste0(example.molecular.data.dir,i,'_profiles.txt'),
+ patients = c(paste0('EP00',1:9), paste0('EP0',10:30))
+ );
+ }
>
> # calculate scaling factors for all three data types
> scaling.factors <- calculate.scaling(molecular.data);
>
> # save the scaling factors to file
> write.scaling.factors(scaling.factors, example.molecular.data.dir);
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/iSubGen/exdata/cna_gene_recenter.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: write.scaling.factors -> write.table -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘iSubGen-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write.scaling.factors
> ### Title: Write scaling factors to file
> ### Aliases: write.scaling.factors
>
> ### ** Examples
>
>
> # load the aberration profiles for three data types
> example.molecular.data.dir <- paste0(path.package('iSubGen'),'/exdata/');
> molecular.data <- list();
> for (i in c('cna','snv','methy')) {
+ molecular.data[[i]] <- load.molecular.aberration.data(
+ paste0(example.molecular.data.dir,i,'_profiles.txt'),
+ patients = c(paste0('EP00',1:9), paste0('EP0',10:30))
+ );
+ }
>
> # calculate scaling factors for all three data types
> scaling.factors <- calculate.scaling(molecular.data);
>
> # save the scaling factors to file
> write.scaling.factors(scaling.factors, example.molecular.data.dir);
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/iSubGen/exdata/cna_gene_recenter.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: write.scaling.factors -> write.table -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘iSubGen-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write.scaling.factors
> ### Title: Write scaling factors to file
> ### Aliases: write.scaling.factors
>
> ### ** Examples
>
>
> # load the aberration profiles for three data types
> example.molecular.data.dir <- paste0(path.package('iSubGen'),'/exdata/');
> molecular.data <- list();
> for (i in c('cna','snv','methy')) {
+ molecular.data[[i]] <- load.molecular.aberration.data(
+ paste0(example.molecular.data.dir,i,'_profiles.txt'),
+ patients = c(paste0('EP00',1:9), paste0('EP0',10:30))
+ );
+ }
>
> # calculate scaling factors for all three data types
> scaling.factors <- calculate.scaling(molecular.data);
>
> # save the scaling factors to file
> write.scaling.factors(scaling.factors, example.molecular.data.dir);
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/iSubGen/exdata/cna_gene_recenter.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: write.scaling.factors -> write.table -> file
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.4
Check: package dependencies
Result: ERROR
Package required but not available: ‘ConsensusClusterPlus’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64