Last updated on 2025-12-31 13:48:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 12.50 | 270.59 | 283.09 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.05 | 292.14 | 302.19 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 25.00 | 289.70 | 314.70 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 27.00 | 350.69 | 377.69 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 22.00 | 193.00 | 215.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.19 | 283.55 | 298.74 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 15.00 | 255.84 | 270.84 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 10.00 | 158.00 | 168.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 20.00 | 190.00 | 210.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 10.00 | 290.00 | 300.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 23.00 | 248.00 | 271.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/117s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.241, system: 0.029, elapsed: 1.270 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.611, system: 0.089, elapsed: 11.333 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.016, elapsed: 0.282 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.543, system: 0.442, elapsed: 5.557 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.003, elapsed: 0.177 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.284, system: 0.601, elapsed: 19.262 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.566, system: 0.033, elapsed: 1.634 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.494, system: 0.126, elapsed: 10.942 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.017, elapsed: 0.314 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.473, system: 0.420, elapsed: 6.292 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.007, elapsed: 0.238 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.489, system: 0.631, elapsed: 20.091 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.722, system: 0.065, elapsed: 2.181 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.663, system: 0.179, elapsed: 11.677 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.014, elapsed: 0.246 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.204, system: 0.385, elapsed: 4.968 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.005, elapsed: 0.212 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.284, system: 0.235, elapsed: 1.538 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.910, system: 0.927, elapsed: 21.617 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.615, system: 0.045, elapsed: 4.129 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.711, system: 0.096, elapsed: 21.698 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.209, system: 0.017, elapsed: 0.445 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.524, system: 0.426, elapsed: 7.318 seconds]
Computing values for grid cells...
... done. [user: 0.192, system: 0.008, elapsed: 0.317 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.027, system: 0.558, elapsed: 15.036 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.951, system: 1.173, elapsed: 50.400 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/220s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.764, system: 0.075, elapsed: 2.682 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.916, system: 0.256, elapsed: 16.041 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.022, elapsed: 0.371 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.518, system: 0.553, elapsed: 7.623 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.008, elapsed: 0.204 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.155, system: 0.948, elapsed: 27.771 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.801, system: 0.086, elapsed: 2.208 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.032, system: 0.371, elapsed: 19.606 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.018, elapsed: 0.968 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.344, system: 0.445, elapsed: 14.863 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.006, elapsed: 0.699 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.093, system: 0.951, elapsed: 39.576 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.614, system: 0.038, elapsed: 4.788 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.672, system: 0.084, elapsed: 25.795 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.013, elapsed: 0.552 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.326, system: 0.417, elapsed: 12.590 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.003, elapsed: 0.545 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.215, system: 0.314, elapsed: 2.512 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.856, system: 0.901, elapsed: 48.800 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.663, system: 0.038, elapsed: 5.291 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.695, system: 0.088, elapsed: 28.283 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.015, elapsed: 0.576 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.337, system: 0.436, elapsed: 14.536 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.004, elapsed: 0.481 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.822, system: 0.547, elapsed: 38.598 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.562, system: 1.152, elapsed: 89.732 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64