Last updated on 2026-10-24 01:51:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.8-4 | 13.93 | 196.24 | 210.17 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.8-4 | 8.89 | 130.99 | 139.88 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.8-4 | 11.00 | 166.83 | 177.83 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.8-4 | 9.00 | 126.46 | 135.46 | OK | |
| r-devel-windows-x86_64 | 1.8-4 | 17.00 | 249.00 | 266.00 | OK | |
| r-patched-linux-x86_64 | 1.8-4 | 12.35 | 192.01 | 204.36 | OK | |
| r-release-linux-x86_64 | 1.8-4 | 12.10 | 191.52 | 203.62 | OK | |
| r-release-macos-arm64 | 1.8-4 | 4.00 | 43.00 | 47.00 | OK | |
| r-release-macos-x86_64 | 1.8-4 | 11.00 | 201.00 | 212.00 | OK | |
| r-release-windows-x86_64 | 1.8-4 | 16.00 | 170.00 | 186.00 | OK | |
| r-oldrel-macos-arm64 | 1.8-4 | 5.00 | 58.00 | 63.00 | OK | |
| r-oldrel-macos-x86_64 | 1.8-4 | 11.00 | 174.00 | 185.00 | OK | |
| r-oldrel-windows-x86_64 | 1.8-4 | 22.00 | 244.00 | 266.00 | OK |
Version: 1.8-4
Check: tests
Result: ERROR
Running ‘2sample.R’ [2s/2s]
Comparing ‘2sample.Rout’ to ‘2sample.Rout.save’ ... OK
Running ‘Cox-Ex.R’ [2s/3s]
Running ‘bugfixes.R’ [3s/3s]
Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ... OK
Running ‘distr-Ex.R’ [2s/2s]
Running ‘dpq-Ex.R’ [7s/11s]
Comparing ‘dpq-Ex.Rout’ to ‘dpq-Ex.Rout.save’ ... OK
Running ‘glm-Ex.R’ [2s/3s]
Comparing ‘glm-Ex.Rout’ to ‘glm-Ex.Rout.save’ ... OK
Running ‘lm-Ex.R’ [3s/4s]
Comparing ‘lm-Ex.Rout’ to ‘lm-Ex.Rout.save’ ... OK
Running ‘missing-responses.R’ [2s/3s]
Running ‘mmlt_ll_sc.R’ [30s/42s]
Running ‘polr-Ex.R’ [2s/2s]
Comparing ‘polr-Ex.Rout’ to ‘polr-Ex.Rout.save’ ... OK
Running ‘predict-Ex.R’ [3s/4s]
Comparing ‘predict-Ex.Rout’ to ‘predict-Ex.Rout.save’ ... OK
Running ‘subset.R’ [2s/2s]
Comparing ‘subset.Rout’ to ‘subset.Rout.save’ ... OK
Running ‘surv-Ex.R’ [2s/3s]
Comparing ‘surv-Ex.Rout’ to ‘surv-Ex.Rout.save’ ... OK
Running the tests in ‘tests/Cox-Ex.R’ failed.
Complete output:
>
> library("mlt")
Loading required package: basefun
Loading required package: variables
> library("survival")
> set.seed(29)
> options(digits = 3)
>
>
> ### true dgp
> rY <- function(n, ...) rexp(n, ...)
> pY <- function(x, ...) pexp(x, ...)
> dY <- function(x, ...) dexp(x, ...)
>
> ### three groups
> gf <- gl(3, 1)
> g <- rep(gf, 500)
> y <- rY(length(g), rate = (1:nlevels(g))[g])
> mydata <- data.frame(y = y, g = g)
>
> boxplot(y ~ g, data = mydata)
>
> ### uncensored, Cox model, h = bernstein
> Bb <- Bernstein_basis(numeric_var("y", support = c(0, max(y) + .1), bounds = c(0, Inf)),
+ order = 5, ui = "increasing")
> s <- as.basis(~ g, data = data.frame(g = gf), remove_intercept = TRUE)
> m <- ctm(response = Bb, shifting = s, todist = "MinExtrVal")
> (cf1 <- coef(opt <- mlt(m, data = mydata)))
Bs1(y) Bs2(y) Bs3(y) Bs4(y) Bs5(y) Bs6(y) g2 g3
-2.556 1.220 1.220 1.220 1.220 1.898 0.839 1.222
> coef(cph <- coxph(Surv(y, rep(TRUE, nrow(mydata))) ~ g, data = mydata))
g2 g3
0.693 1.004
> yn <- mkgrid(Bb, 50)$y
> yn <- yn[yn > 0]
> a <- predict(opt, newdata = data.frame(g = gf[1]), q = yn)
> layout(matrix(1:4, ncol = 2))
> plot(yn, a, type = "l", col = "red")
> lines(yn, log(yn))
> a <- predict(opt, newdata = data.frame(g = gf), q = yn, type = "survivor")
> plot(yn, a[,1], type = "l", col = "red", ylim = c(0, 1))
> lines(survfit(cph, newdata = data.frame(g = gf[1])))
Error in a$specials[[i]] : subscript out of bounds
Calls: lines ... survfit.coxph -> model.matrix.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc