Last updated on 2024-08-08 00:49:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 13.40 | 118.37 | 131.77 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 11.44 | 83.77 | 95.21 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 222.97 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 214.98 | ERROR | |||
| r-devel-windows-x86_64 | 1.1.2 | 14.00 | 156.00 | 170.00 | OK | |
| r-patched-linux-x86_64 | 1.1.2 | 12.84 | 110.87 | 123.71 | ERROR | |
| r-release-linux-x86_64 | 1.1.2 | 12.58 | 113.34 | 125.92 | OK | |
| r-release-macos-arm64 | 1.1.2 | 106.00 | OK | |||
| r-release-macos-x86_64 | 1.1.2 | 193.00 | OK | |||
| r-release-windows-x86_64 | 1.1.2 | 15.00 | 153.00 | 168.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.2 | 147.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.2 | 218.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.2 | 20.00 | 188.00 | 208.00 | OK |
Version: 1.1.2
Check: examples
Result: ERROR
Running examples in ‘refseqR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: refseq_AA_length
> ### Title: Get the amino acid length from a protein accession
> ### Aliases: refseq_AA_length
>
> ### ** Examples
>
> # Get the XM ids from a set of XP accessions
> protein = c("XP_004487758", "XP_004488550")
> sapply(protein, function(x) refseq_AA_length(x, retries = 4), USE.NAMES = FALSE)
Error: parse error: premature EOF
(right here) ------^
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘refseqR.Rmd’ using rmarkdown
Quitting from lines 37-40 [unnamed-chunk-2] (refseqR.Rmd)
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
parse error: premature EOF
(right here) ------^
--- failed re-building ‘refseqR.Rmd’
SUMMARY: processing the following file failed:
‘refseqR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.1.2
Check: examples
Result: ERROR
Running examples in ‘refseqR-Ex.R’ failed
The error most likely occurred in:
> ### Name: refseq_AA_length
> ### Title: Get the amino acid length from a protein accession
> ### Aliases: refseq_AA_length
>
> ### ** Examples
>
> # Get the XM ids from a set of XP accessions
> protein = c("XP_004487758", "XP_004488550")
> sapply(protein, function(x) refseq_AA_length(x, retries = 4), USE.NAMES = FALSE)
Error: parse error: premature EOF
(right here) ------^
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘refseqR.Rmd’ using rmarkdown
Quitting from lines 37-40 [unnamed-chunk-2] (refseqR.Rmd)
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
parse error: premature EOF
(right here) ------^
--- failed re-building ‘refseqR.Rmd’
SUMMARY: processing the following file failed:
‘refseqR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc