Last updated on 2024-09-18 12:48:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4 | 12.44 | 97.86 | 110.30 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.4 | 10.63 | 74.60 | 85.23 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.4 | 184.74 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4 | 184.31 | OK | |||
| r-devel-windows-x86_64 | 1.4 | 14.00 | 109.00 | 123.00 | NOTE | |
| r-patched-linux-x86_64 | 1.4 | 15.71 | 93.70 | 109.41 | OK | |
| r-release-linux-x86_64 | 1.4 | 11.57 | 92.86 | 104.43 | OK | |
| r-release-macos-arm64 | 1.4 | 110.00 | OK | |||
| r-release-macos-x86_64 | 1.4 | 99.00 | OK | |||
| r-release-windows-x86_64 | 1.4 | 14.00 | 102.00 | 116.00 | OK | |
| r-oldrel-macos-arm64 | 1.4 | 73.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.4 | 134.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.4 | 16.00 | 125.00 | 141.00 | OK |
Version: 1.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
createDatamatrix.Rd: FamiliasLocus
relMix.Rd: FamiliasPedigree, FamiliasLocus, Familias,
FamiliasPosterior
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 1.4
Check: examples
Result: ERROR
Running examples in ‘relMix-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: relMix
> ### Title: Relationship inference based on mixtures
> ### Aliases: relMix
>
> ### ** Examples
>
> #Example 1: paternity trio with mixture of mother and child
> #Define alleles and frequencies
> alleles <- 1:2
> afreq <- c(0.4,0.6)
> #Define pedigrees
> persons <- c("CH","MO","AF")
> ped1 <- Familias::FamiliasPedigree(id=persons, dadid=c("AF",NA, NA), momid=c("MO", NA,NA),
+ sex=c("male", "female", "male"))
> ped2 <- Familias::FamiliasPedigree(id=c(persons, "TF"), dadid=c("TF", NA, NA,NA),
+ momid=c("MO", NA, NA,NA), sex=c("male", "female", "male", "male"))
> pedigrees <- list(isFather = ped1, unrelated=ped2)
> #Create locus object
> locus <- Familias::FamiliasLocus(frequencies=afreq,name="M1",
+ allelenames= alleles)
> #Known genotypes of alleged father and mother
> gAF <- c(1,1)
> gMO <- c(1,1)
> #Mixture alleles
> R <- c(1,2)
> datamatrix <- createDatamatrix(locus,knownGenos=list(AF=gAF,MO=gMO),idsU=c("CH"))
> #Define dropout and drop-in values
> d <- 0.1
> di <- 0.05
> res <- relMix(pedigrees, locus, R, datamatrix, ids=c("MO","CH"),
+ D=list(c(0,0),c(d,d^2)),di=di, kinship=0)
*** buffer overflow detected ***: terminated
Aborted
Flavor: r-devel-linux-x86_64-debian-clang