gtexr: Query the GTEx Portal API

A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API. The GTEx project is a comprehensive public resource for studying tissue-specific gene expression and regulation in human tissues. Through systematic analysis of RNA sequencing data from 54 non-diseased tissue sites across nearly 1000 individuals, GTEx provides crucial insights into the relationship between genetic variation and gene expression. This data is accessible through the GTEx Portal API enabling programmatic access to human gene expression data. For more information on the API, see <https://gtexportal.org/api/v2/redoc>.

Version: 0.2.0
Depends: R (≥ 4.2.0)
Imports: cli, dplyr, httr2 (≥ 1.0.0), purrr, rlang, tibble, tidyr
Suggests: curl, httptest2, knitr, rmarkdown, spelling, stringr, testthat (≥ 3.0.0), withr
Published: 2025-04-23
DOI: 10.32614/CRAN.package.gtexr
Author: Alasdair Warwick ORCID iD [aut, cre, cph], Benjamin Zuckerman ORCID iD [aut], Abraham Olvera-Barrios ORCID iD [aut], Chuin Ying Ung ORCID iD [aut], Robert Luben ORCID iD [aut], Zhian N. Kamvar ORCID iD [rev]
Maintainer: Alasdair Warwick <alasdair.warwick.19 at ucl.ac.uk>
BugReports: https://github.com/ropensci/gtexr/issues
License: MIT + file LICENSE
URL: https://docs.ropensci.org/gtexr/, https://github.com/ropensci/gtexr
NeedsCompilation: no
Language: en-US
Citation: gtexr citation info
Materials: README NEWS
CRAN checks: gtexr results

Documentation:

Reference manual: gtexr.pdf
Vignettes: Developer guide (source, R code)
Introduction to gtexr (source, R code)

Downloads:

Package source: gtexr_0.2.0.tar.gz
Windows binaries: r-devel: gtexr_0.1.0.zip, r-release: gtexr_0.1.0.zip, r-oldrel: gtexr_0.1.0.zip
macOS binaries: r-release (arm64): gtexr_0.2.0.tgz, r-oldrel (arm64): gtexr_0.2.0.tgz, r-release (x86_64): gtexr_0.2.0.tgz, r-oldrel (x86_64): gtexr_0.2.0.tgz
Old sources: gtexr archive

Linking:

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