vg::MEMClusterer::HitNode Class Reference

#include <cluster.hpp>

Public Member Functions
	HitNode (const MaximalExactMatch &mem, pos_t start_pos, int32_t score)
	HitNode ()=default
	~HitNode ()=default

Public Attributes
const MaximalExactMatch *	mem
pos_t	start_pos
	Position of GCSA hit in the graph.
int32_t	score
	Score of the exact match this node represents.
int32_t	dp_score
	Score used in dynamic programming.
vector< HitEdge >	edges_from
	Edges from this node that are colinear with the read.
vector< HitEdge >	edges_to
	Edges to this node that are colinear with the read.

Constructor & Destructor Documentation

HitNode() [1/2]

vg::MEMClusterer::HitNode::HitNode ( const MaximalExactMatch & mem, pos_t start_pos, int32_t score )

inline

HitNode() [2/2]

vg::MEMClusterer::HitNode::HitNode ( )

default

~HitNode()

vg::MEMClusterer::HitNode::~HitNode ( )

default

Member Data Documentation

dp_score

int32_t vg::MEMClusterer::HitNode::dp_score

Score used in dynamic programming.

edges_from

vector<HitEdge> vg::MEMClusterer::HitNode::edges_from

Edges from this node that are colinear with the read.

edges_to

vector<HitEdge> vg::MEMClusterer::HitNode::edges_to

Edges to this node that are colinear with the read.

mem

const MaximalExactMatch* vg::MEMClusterer::HitNode::mem

score

int32_t vg::MEMClusterer::HitNode::score

Score of the exact match this node represents.

start_pos

pos_t vg::MEMClusterer::HitNode::start_pos

Position of GCSA hit in the graph.

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The documentation for this class was generated from the following file:

• src/cluster.hpp