algorithms Directory Reference

Files
	alignment_path_offsets.cpp
	alignment_path_offsets.hpp
	approx_path_distance.cpp
	approx_path_distance.hpp
	back_translate.cpp
	back_translate.hpp
	chain_items.cpp
	chain_items.hpp
	component.cpp
	component.hpp
	count_covered.hpp
	coverage_depth.cpp
	coverage_depth.hpp
	dfs.cpp
	dfs.hpp
	disjoint_components.cpp
	disjoint_components.hpp
	distance_to_head.cpp
	distance_to_head.hpp
	distance_to_tail.cpp
	distance_to_tail.hpp
	expand_context.cpp
	expand_context.hpp
	extract_connecting_graph.cpp
	extract_connecting_graph.hpp
	extract_containing_graph.cpp
	extract_containing_graph.hpp
	extract_extending_graph.cpp
	extract_extending_graph.hpp
	extract_subchain.cpp
	extract_subchain.hpp
	find_gbwt.cpp
	find_gbwt.hpp
	find_gbwtgraph.cpp
	find_gbwtgraph.hpp
	find_translation.cpp
	find_translation.hpp
	gfa_to_handle.cpp
	gfa_to_handle.hpp
	gfaz_to_handle.cpp
	gfaz_to_handle.hpp
	id_sort.cpp
	id_sort.hpp
	intersect_path_offsets.cpp
	intersect_path_offsets.hpp
	jump_along_path.cpp
	jump_along_path.hpp
	k_widest_paths.cpp
	k_widest_paths.hpp
	kmer.cpp
	kmer.hpp
	locally_expand_graph.cpp
	locally_expand_graph.hpp
	merge.cpp
	merge.hpp
	min_cut_graph.cpp
	min_cut_graph.hpp
	nearest_offsets_in_paths.cpp
	nearest_offsets_in_paths.hpp
	next_pos_chars.cpp
	next_pos_chars.hpp
	normalize.cpp
	normalize.hpp
	pad_band.cpp
	pad_band.hpp
	path_string.cpp
	path_string.hpp
	prune.cpp
	prune.hpp
	prune_to_connecting_graph.cpp
	prune_to_connecting_graph.hpp
	ref_path_distance.cpp
	ref_path_distance.hpp
	sample_minimal.cpp
	sample_minimal.hpp
	simplify_siblings.cpp
	simplify_siblings.hpp
	sorted_id_ranges.cpp
	sorted_id_ranges.hpp
	subgraph.cpp
	subgraph.hpp
	three_edge_connected_components.cpp
	three_edge_connected_components.hpp
	walk.cpp
	walk.hpp