Here is a list of all variables with links to the classes they belong to:

- g -

gaf_output : vg::FlowCaller, vg::NestedFlowCaller, vg::VCFGenotyper
gaf_sample_name : vg::GAFOutputCaller
gam_format : GBWTConfig
gap_extend : ScoringOptions, vg::WFATree
gap_extension : vg::DeletionAligner, vg::EditAlignmentScorer, vg::SSWAligner
gap_length : vg::WFAExtender::ErrorModel
gap_lengths : vg::LoggedGapAlignmentScorer
gap_memo_max_size : vg::MultipathMapper
gap_open : ScoringOptions, vg::DeletionAligner, vg::EditAlignmentScorer, vg::SSWAligner, vg::WFATree
gap_scale : vg::algorithms::ChainScoringScheme, vg::MinimizerMapper
gapless_extension_limit : vg::MinimizerMapper
gaps : vg::WFAExtender::ErrorModel
gbwt : vg::Deconstructor, vg::GBWTTraversalFinder
gbwt_buffer_size : vg::HaplotypeIndexer
gbwt_file : vg::GAFSorterFile, vg::GAFSorterParameters
gbwt_graph : vg::MinimizerMapper, vg::PrimerFinder
gbwt_index : vg::PhaseUnfolder, vg::PrimerFinder
gbwt_insert_batch_size : vg::IndexingParameters
gbwt_insert_batch_size_increase_factor : vg::IndexingParameters
gbwt_name : GBWTConfig
gbwt_node_offset : vg::FragmentedHaplotypeVisit
gbwt_output : GBWTConfig
gbwt_reference_samples : vg::Deconstructor
gbwt_sample_to_phase_range : vg::Deconstructor
gbwt_sampling_interval : vg::IndexingParameters
gbwt_trav_finder : vg::Deconstructor
gbwtgraph_name : GBWTConfig
gbz : vg::GBZGraph, vg::HaplotypePartitioner, vg::Recombinator
gbz_graph : GraphHandler
gbz_output : HaplotypesConfig
gbz_version : GBWTConfig
gc_content_estimate : vg::AlignerClient
gcsa : vg::BaseMapper
gcsa_doubling_steps : vg::IndexingParameters
gcsa_initial_kmer_length : vg::IndexingParameters
gcsa_size_limit : vg::IndexingParameters
generalizations : vg::IndexRegistry
genome : vg::MCMCCaller
genotype_by_ploidy : vg::NestedFlowCaller::CallRecord
genotype_snarls : vg::FlowCaller, vg::NestedFlowCaller
get_edge_support : vg::RepresentativeTraversalFinder
get_handle_memo : vg::MemoizingGraph
get_index : vg::RepresentativeTraversalFinder
get_node_support : vg::RepresentativeTraversalFinder
get_rescue_graph_from_paths : vg::MultipathMapper
get_seed : vg::LazyRNG
gfa_id_space : vg::GFAHandleGraph
gfa_parameters : GBWTConfig
gff_feature_name : vg::IndexingParameters
gff_transcript_tag : vg::IndexingParameters
giraffe_gbwt_downsample : vg::IndexingParameters
giraffe_mapper : vg::PrimerFinder
globals : vg::DiagramExplainer
go_left : vg::ChainIterator
gq : vg::PoissonSupportSnarlCaller::PoissonCallInfo
grandparent_net_handle : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
graph : haplo::hDP_gbwt_graph_accessor< GBWTType >, vg::AbstractReadSampler, vg::AliasGraph, vg::AugmentedGraph, vg::BandedGlobalAligner< IntType >::AltTracebackStack, vg::BandedGlobalAligner< IntType >, vg::CactusSnarlFinder, vg::ConstructedChunk, vg::ContractingGraph, vg::DagifiedGraph, vg::Deconstructor, vg::DozeuInterface::OrderedGraph, vg::DozeuPinningOverlay, vg::ExhaustiveTraversalFinder, vg::FlowCaller, vg::FlowTraversalFinder, vg::GaplessExtender, vg::GBWTTraversalFinder, vg::GraphSynchronizer, vg::GrefCover, vg::HandleGraphNodeSet, vg::HandleGraphSnarlFinder, vg::IdentityOverlay, vg::IncrementalSubgraph, vg::IntegratedSnarlFinder::MergedAdjacencyGraph, vg::LegacyCaller, vg::Masker, vg::MCMCGenotyper, vg::MemoizingGraph, vg::MultipathAlignmentEmitter, vg::NestedFlowCaller, vg::NetGraph, vg::NullMaskingGraph, vg::Packer, vg::PathBasedTraversalFinder, vg::PathChunker, vg::PathOrientedDistanceMeasurer, vg::PathRestrictedTraversalFinder, vg::PathTraversalFinder, vg::PrimerFinder, vg::RareVariantSimplifier, vg::ReadFilter< Read >, vg::RegionExpander, vg::RepresentativeTraversalFinder, vg::SmallSnarlSimplifier, vg::SnarlDistanceIndexClusterer, vg::SplicedHTSAlignmentEmitter, vg::StrandSplitGraph, vg::SupportBasedSnarlCaller, vg::Surjector, vg::TraversalSupportFinder, vg::TrivialTraversalFinder, vg::VariantAdder, vg::VCFGenotyper, vg::VCFTraversalFinder, vg::VG, vg::VG::Plan, vg::WFAExtender, vg::WFATree
graph_file : ChainsConfig
graph_name : GBWTConfig, HaplotypesConfig, MinimizerConfig
graph_output : GBWTConfig
greedy_min_dist : vg::MultipathMapper
greedy_pieces : vg::Constructor
greedy_restart_assume_substitution : vg::BaseMapper
greedy_restart_max_count : vg::BaseMapper
greedy_restart_max_lcp : vg::BaseMapper
greedy_restart_min_length : vg::BaseMapper
gref_intervals : vg::GrefCover
gref_prefix : vg::GrefCover
gref_suffix : vg::GrefCover
group_size : vg::Funnel::Item