gamsort_main.cpp File Reference

#include "subcommand.hpp"
#include "../alignment.hpp"
#include "../gaf_sorter.hpp"
#include "../stream_index.hpp"
#include "../stream_sorter.hpp"
#include <vg/io/stream.hpp>
#include <getopt.h>

Functions
void	help_gamsort (char **argv)
int	main_gamsort (int argc, char **argv)

Detailed Description

Defines the "vg gamsort" subcommand for sorting and shuffling GAM and GAF files.

Function Documentation

help_gamsort()

void help_gamsort

(

char **

argv

)

main_gamsort()

int main_gamsort	(	int	argc,
		char **	argv )