phase_unfolder.cpp File Reference

#include "phase_unfolder.hpp"
#include "progress_bar.hpp"
#include "algorithms/disjoint_components.hpp"
#include <cassert>
#include <iostream>
#include <map>
#include <set>

Classes
struct	vg::PathBranch

Namespaces
namespace	vg

Functions
vg::id_t	vg::path_node (const vector< pair< vg::id_t, bool > > &path, size_t i)
vg::id_t	vg::path_node (const gbwt::vector_type &path, size_t i)
size_t	vg::path_size (const vector< pair< vg::id_t, bool > > &path)
size_t	vg::path_size (const gbwt::vector_type &path)
bool	vg::path_reverse (const vector< pair< vg::id_t, bool > > &path, size_t i)
bool	vg::path_reverse (const gbwt::vector_type &path, size_t i)
std::ostream &	vg::operator<< (std::ostream &out, PathBranch branch)
template<class PathType>
bool	vg::verify_path (const PathType &path, MutableHandleGraph &unfolded, const hash_map< vg::id_t, std::vector< vg::id_t > > &reverse_mapping)
template<class Decoder>
void	vg::printId (vg::id_t id)
PhaseUnfolder::path_type	vg::canonical_orientation (const PhaseUnfolder::path_type &path, bool &from_border, bool &to_border)