vg::MinimizerMapper::alignment_index_t Struct Reference

Public Member Functions
read_alignment_index_t	without_read ()
	Drop the read field.
template<typename NestedArray>
auto	lookup_in (NestedArray &a) const -> typename std::add_lvalue_reference< decltype(a[0][0][0])>::type
bool	operator== (const alignment_index_t &other) const
bool	operator!= (const alignment_index_t &other) const

Public Attributes
size_t	fragment
size_t	alignment
bool	read

Detailed Description

Type to point to an alignment of either read <fragment index, alignment_index, read number (0 or 1)>

Member Function Documentation

lookup_in()

template<typename NestedArray>

auto vg::MinimizerMapper::alignment_index_t::lookup_in ( NestedArray & a ) const -> typename std::add_lvalue_reference< decltype(a[0][0][0])>::type

inline

Allow looking up this index in a structure organized by fragment, read, and alignment, such as in alignments, or alignment_indices.

operator!=()

bool vg::MinimizerMapper::alignment_index_t::operator!= ( const alignment_index_t & other ) const

inline

operator==()

bool vg::MinimizerMapper::alignment_index_t::operator== ( const alignment_index_t & other ) const

inline

without_read()

read_alignment_index_t vg::MinimizerMapper::alignment_index_t::without_read ( )

inline

Drop the read field.

Member Data Documentation

alignment

size_t vg::MinimizerMapper::alignment_index_t::alignment

fragment

size_t vg::MinimizerMapper::alignment_index_t::fragment

read

bool vg::MinimizerMapper::alignment_index_t::read

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The documentation for this struct was generated from the following file:

• src/minimizer_mapper.cpp