vg::WFAPoint Struct Reference

Public Types
using	key_type = std::pair<int32_t, int32_t>
using	value_type = std::pair<uint32_t, uint32_t>
using	map_entry_type = std::pair<key_type, value_type>

Public Member Functions
int32_t	target_offset () const
int32_t	alignment_score (const Aligner &aligner) const
int32_t	alignment_score (const Aligner &aligner, uint32_t final_insertion) const
MatchPos	pos (const MatchPos::PathList &path) const
bool	operator< (const WFAPoint &another) const
key_type	key () const
value_type	value () const

Static Public Member Functions
static WFAPoint	from_key_value (const key_type &key, const value_type &value)
static WFAPoint	from_map_entry (const map_entry_type &entry)

Public Attributes
int32_t	score
int32_t	diagonal
uint32_t	seq_offset
uint32_t	node_offset

Member Typedef Documentation

key_type

using vg::WFAPoint::key_type = std::pair<int32_t, int32_t>

map_entry_type

using vg::WFAPoint::map_entry_type = std::pair<key_type, value_type>

value_type

using vg::WFAPoint::value_type = std::pair<uint32_t, uint32_t>

Member Function Documentation

alignment_score() [1/2]

int32_t vg::WFAPoint::alignment_score ( const Aligner & aligner ) const

inline

alignment_score() [2/2]

int32_t vg::WFAPoint::alignment_score ( const Aligner & aligner, uint32_t final_insertion ) const

inline

from_key_value()

WFAPoint vg::WFAPoint::from_key_value ( const key_type & key, const value_type & value )

inlinestatic

from_map_entry()

WFAPoint vg::WFAPoint::from_map_entry ( const map_entry_type & entry )

inlinestatic

key()

key_type vg::WFAPoint::key ( ) const

inline

operator<()

bool vg::WFAPoint::operator< ( const WFAPoint & another ) const

inline

pos()

MatchPos vg::WFAPoint::pos ( const MatchPos::PathList & path ) const

inline

target_offset()

int32_t vg::WFAPoint::target_offset ( ) const

inline

value()

value_type vg::WFAPoint::value ( ) const

inline

Member Data Documentation

diagonal

int32_t vg::WFAPoint::diagonal

node_offset

uint32_t vg::WFAPoint::node_offset

score

int32_t vg::WFAPoint::score

seq_offset

uint32_t vg::WFAPoint::seq_offset

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The documentation for this struct was generated from the following file:

• src/gbwt_extender.cpp