Last updated on 2026-02-01 13:51:20 CET.
| Package | ERROR | OK |
|---|---|---|
| annotaR | 1 | 12 |
| BioMoR | 13 |
Current CRAN status: ERROR: 1, OK: 12
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘annotaR-workflow.Rmd’ using rmarkdown
Quitting from annotaR-workflow.Rmd:45-56 [annotation]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [asia.ensembl.org]:
Operation timed out after 10002 milliseconds with 0 bytes received
---
Backtrace:
▆
1. ├─... %>% add_drug_links()
2. ├─annotaR::add_drug_links(.)
3. │ └─"gene" %in% names(annotaR_object)
4. └─annotaR::add_disease_links(.)
5. ├─biomaRt::getBM(...)
6. │ └─biomaRt:::martCheck(mart)
7. └─biomaRt::useEnsembl("genes", "hsapiens_gene_ensembl")
8. └─biomaRt:::.listEnsembl(version = version, GRCh = GRCh, mirror = mirror)
9. └─biomaRt:::.currentEnsemblVersion()
10. └─biomaRt::listEnsemblArchives()
11. └─biomaRt:::.listEnsemblArchives(http_config = list())
12. └─biomaRt:::.checkArchiveList(http_config)
13. └─biomaRt:::.getArchiveList(http_config = http_config)
14. └─httr2::req_perform(html_request)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'annotaR-workflow.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [asia.ensembl.org]:
Operation timed out after 10002 milliseconds with 0 bytes received
--- failed re-building ‘annotaR-workflow.Rmd’
SUMMARY: processing the following file failed:
‘annotaR-workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Current CRAN status: OK: 13