Last updated on 2026-04-24 01:50:16 CEST.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| CongreveLamsdell2016 | 1 | 13 | ||
| ips | 14 | |||
| motmot | 1 | 13 | ||
| PlotTools | 14 | |||
| Quartet | 14 | |||
| Rogue | 2 | 12 | ||
| TBRDist | 1 | 13 | ||
| Ternary | 3 | 11 | ||
| TotalCopheneticIndex | 2 | 12 | ||
| TreeDist | 2 | 3 | 9 | |
| TreeSearch | 3 | 11 | ||
| TreeTools | 2 | 1 | 11 |
Current CRAN status: ERROR: 1, OK: 13
Version: 1.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'Compare-methods.Rmd' using rmarkdown
! Package pdftex.def Error: File `7d4355197960f10ca4f7663dd3110ecf62ac8353.pdf'
not found: using draft setting.
Error: processing vignette 'Compare-methods.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/CongreveLamsdell2016.Rcheck/vign_test/CongreveLamsdell2016/vignettes/Compare-methods.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Compare-methods.log for more info.
--- failed re-building 'Compare-methods.Rmd'
--- re-building 'Compare-node-supports.Rmd' using rmarkdown
! Package pdftex.def Error: File `7e4e53697aa6797bf5790f88a07c3daf5b8dc9fd.pdf'
not found: using draft setting.
Error: processing vignette 'Compare-node-supports.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/CongreveLamsdell2016.Rcheck/vign_test/CongreveLamsdell2016/vignettes/Compare-node-supports.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Compare-node-supports.log for more info.
--- failed re-building 'Compare-node-supports.Rmd'
--- re-building 'Conduct-analyses.Rmd' using rmarkdown
--- finished re-building 'Conduct-analyses.Rmd'
SUMMARY: processing the following files failed:
'Compare-methods.Rmd' 'Compare-node-supports.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: NOTE: 1, OK: 13
Version: 2.1.3
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavor: r-oldrel-macos-arm64
Version: 2.1.3
Check: Rd files
Result: NOTE
checkRd: (-1) transformPhylo.MCMC.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.MCMC.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.MCMC.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.MCMC.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.MCMC.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.MCMC.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:119: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:120: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:121: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:122: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:123: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:124: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:125: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:126: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:127: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:128: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:129: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:130: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:131: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:132: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ML.Rd:133: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.Rd:97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.Rd:98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.Rd:99: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.Rd:100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:101: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:104: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:105: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:108: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:111: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) transformPhylo.ll.Rd:114: Lost braces in \itemize; meant \describe ?
Flavor: r-oldrel-macos-arm64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: NOTE: 2, OK: 12
Version: 2.2.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘matrixStats’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 1, OK: 13
Version: 2.0.0
Check: installed package size
Result: NOTE
installed size is 9.7Mb
sub-directories of 1Mb or more:
libs 9.6Mb
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 3, OK: 11
Version: 2.3.6
Check: installed package size
Result: NOTE
installed size is 6.4Mb
sub-directories of 1Mb or more:
doc 5.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 12
Version: 2.0.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Martin R. Smith <martin.smith@durham.ac.uk>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 2, NOTE: 3, OK: 9
Version: 2.12.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.12.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘TreeDistData’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.12.0
Check: installed package size
Result: NOTE
installed size is 6.7Mb
sub-directories of 1Mb or more:
doc 1.1Mb
libs 4.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 3, OK: 11
Version: 1.7.0
Check: installed package size
Result: NOTE
installed size is 6.3Mb
sub-directories of 1Mb or more:
datasets 1.6Mb
doc 1.3Mb
libs 1.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: WARN: 2, NOTE: 1, OK: 11
Version: 2.2.0
Check: Rd files
Result: WARN
2026-03-23 09:58:03.478 R[70648:465865] XType: Using static font registry.
Flavor: r-release-macos-arm64
Version: 2.2.0
Check: installed package size
Result: NOTE
installed size is 7.6Mb
sub-directories of 1Mb or more:
R 1.1Mb
libs 5.5Mb
Flavor: r-oldrel-macos-arm64
Version: 2.2.0
Check: Rd files
Result: WARN
2026-03-20 23:16:39.163 R[26288:198695] XType: Using static font registry.
Flavor: r-oldrel-macos-arm64
Version: 2.3.0
Check: installed package size
Result: NOTE
installed size is 8.5Mb
sub-directories of 1Mb or more:
R 1.1Mb
libs 6.3Mb
Flavor: r-oldrel-macos-x86_64